NMR exploits the behavior of certain atoms when they are placed in a very strong magnetic field. For biochemists these are mainly H, N, C and P. H and P are highly abundant isotopes while N and C are present at only low levels. Studies using these nuclei generally require isotopic enrichment, which means the molecule will be produced from media that has been enriched by these particular isotopes.
The principle behind NMR is that many nuclei have spin and all nuclei are electrically charged. If an external magnetic field is applied, an energy transfer is possible between the base energy to a higher energy level. The energy transfer takes place at a wavelength that corresponds to radio frequencies and when the spin returns to its base level, energy is emitted at the same frequency. The signal that matches this transfer is measured in many ways and processed in order to yield an NMR spectrum for the nucleus concerned.
In simple terms, when a sample is placed in the magnet, the nuclei of the atoms align with the magnetic field in the same way that the needle of a compass aligns itself in the earth's magnetic field. Typically the magnets used in NMR spectroscopy are 10,000-15,000 times stronger than the Earth’s magnetic field. The NMR experiment generally consists of applying short bursts or pulses of energy in the radio frequency (RF) range, typically 40-800 MHz, to the sample. These pulses of RF cause the nuclei to rotate away from their equilibrium position and they start to rotate around the axis of the magnetic field. The exact frequency at which the nuclei rotate is related to both the chemical and physical environment of the atom in the molecule. By using different combinations of RF pulses and delays, it is possible to determine how each atom in the molecule interacts with other atoms in the molecule. Using a large set of these interactions it is possible to calculate the three-dimensional structures of molecules.