Apert syndrome is a genetic disease (or genetic defect) caused by a mutated gene. More specifically, it is caused by mutations in the fibroblast growth factor receptor 2 gene (FGFR2), located on chromosome 10. The FGFR2 protein is involved in embryonic development, cell division and growth, and cell maturation. The figure bellow (HIH, 2008, public domain) shows the exact location of the gene mutations that causes Apert syndrome.
In regard to Apert syndrome, almost all cases are caused by any of two mutations in the FGFR2 gene. These are simple mutations in which one of the amino acids of the proteins is changed. In one mutation a serine amino acid (located in position 252) is changed by a tryptophan (mutation Ser252Trp). The second mutation is a Pro253Arg in which a proline amino acid is replaced by an arginine amino acid at position 253. These single point mutations cause the FGFRG2 protein to lose its proper functioning and consequently the symptoms of Apert disease.