DNA fingerprinting works by exploiting the fact that in our DNA there are highly variable sequences that are repeated throughout our genome. The pattern of these repeats is unique to every individual. They are called Variable Number of Tandem Repeats (VNTRs).
The first method of obtaining a DNA fingerprint was RFLP. Cells are broken into by chemicals called restriction enzymes that recognise specific DNA sequences within the VNTR sections. The enzymes cut up the DNA into smaller chunks which are then called Restriction Fragment Length Polymorphisms (RFLPs). They are then arranged in order of length on an agarose-based gel.
DNA is a charged particle and when electricity is applied the smaller segments move quicker through the gel than the larger ones. They separate, and a banding pattern, unique to each individual is formed. Radioactive probes are applied. They bind to specific DNA sequences and a photographic plate is obtained showing the DNA bandings. This approach, however, needs quite a large amount of DNA to work with.
The technique most commonly used today is PCR (polymerase chain reaction). It can replicate tiny segments of DNA for further analysis. PCR analyses Short Tandem Repeats (STRs), small sections that are contained within the VNTRs, and are specific to an individual.